PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008239059.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 590aa    MW: 66755 Da    PI: 10.0324
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008239059.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3573.6e-18143229195
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k +++s+v +  +l lp kf+e+h +k ++s +++lede+g++++  +   +k+ +  l++GW++F+ +++L++gD +vF+l++  +f  ++ 
  XP_008239059.1 143 FVKSMVRSHVYSCFWLGLPSKFCEDHLSK-TGS-EMVLEDEDGNEYDAVY--IGKRAG--LSGGWRGFALEHKLDDGDALVFELTEPARF--KIY 229
                     89************************655.444.9***************..555544..9**********************9765555..444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-20136232IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-22138231IPR015300DNA-binding pseudobarrel domain
CDDcd100174.31E-25141232No hitNo description
PROSITE profilePS5086313.056143234IPR003340B3 DNA binding domain
SMARTSM010193.1E-23143234IPR003340B3 DNA binding domain
PfamPF023627.5E-17143230IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MVAAVDSFTA NTYEEARNQR LEENKRKFQD LGISNISKTL THLTASPNKS QQRVSRPKAK  60
NTCFDLEPRR SSRQRNPIQS YRDDVDIGLP TLRKGSRKTS SSWGSYLARP IEEVRAASYE  120
ERSAAFKAAE KLQENLQTEN PSFVKSMVRS HVYSCFWLGL PSKFCEDHLS KTGSEMVLED  180
EDGNEYDAVY IGKRAGLSGG WRGFALEHKL DDGDALVFEL TEPARFKIYI VKAYPMPSLE  240
CLKNNVDKEE ITSAEKTSKA AMKTDSESNQ KRKSKRGIVP EMDESQTSPD SEPNQKRRSK  300
RGTVPAMVDT KTFPDSESIQ KRRSERDVVP VMEDSKTSPV LEPNQRRRSK RGLVPEMDDT  360
KTAPDSEPNQ KRRSKRGLVP EMDDTKTAPD SEPNQKRRSK RGTVPAMVDT KTSPDSESIQ  420
KRRSERGVVP VMEDPKTSPV LEPNQRRRSK RGMVPVMDDT KTSPDSESNQ KQRSKRGIVP  480
EMDDTKTSPK VLPDSPKGQE IEQEVSPMKK NEVAPKQIRK KAKANRVRST ENPEGCEVQE  540
ANTESPEGCE VKQEASTTAT DSRVVKDEKE CVARKPRKKV VKERLFRKRA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239059.10.0PREDICTED: serine/arginine repetitive matrix protein 1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF124332328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.19e-73B3 family protein